OntoGene Presentations

Table of Contents

1 BioCreative 2013

OntoGene's participation in BioCreative 2013 was a resounding success. We were involved in 3 tasks (in task 5 with two slightly different versions of ODIN), obtaining top ranked results in the CTD tasks and very good comments on the BioC and IAT tasks (which did not have a quantitative evaluation). We had a total of 4 papers, 3 presentations and one demo (we are probably the most active participant in BioCreative). Below you can find the papers and presentations.

1.1 Task 1 (BioC)

PRESENTATION

PAPER PyBioC: a python implementation of the BioC core. Hernani Marques, Fabio Rinaldi. Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, vol. 1, pg. 2-4

1.2 Task 3 (CTD)

PRESENTATION

PAPER OntoGene: CTD entity and action term recognition Fabio Rinaldi, Simon Clematide, Tilia Renate Ellendorff, Hernani Marques. Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, vol. 1, pages 90-94

1.3 Task 5 (IAT)

PRESENTATION

PAPER Assisted curation of growth conditions that affect gene expression in E. coli K-12. Socorro Gama-Castro, Fabio Rinaldi, Alejandra López-Fuentes, Yalbi Itzel Balderas-Martínez, Simon Clematide, Tilia Renate Ellendorff, Julio Collado-Vides. Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, vol. 1, pages 214-218

PAPER ODIN: a customizable literature curation tool. Fabio Rinaldi, Allan Peter Davis, Christopher Southan, Simon Clematide, Tilia Renate Ellendorff, Gerold Schneider. Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, vol. 1, pages 219-223

Date: 2013-10-15 13:48:52 CEST

Author: Fabio Rinaldi